.
Articles dans des revues à comité de lecture répertoriées dans la base ISI Web of Knowledge : (ACL)
EQUIPE BIO-FEEL
Alric, B., Berthon, V., Jenny, J.P., Arnaud, F., Pignol, C., Reyss, J.L., Perga M.E. 2013. Local forcings affect the vulnerability and responses of lake food webs to climate warming. Ecology94:2767-2780
ANNEVILLE, O., BENISTON, M., GALLINA, N., GILLET, C., JACQUET, S., PERROUD, M. 2013. L’empreinte du changement climatique dans le Léman. Archives des Sciences 66:157-172
Berdjeb, L., Pollet, T., Chardon, C., Jacquet, S. 2013. Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes. FEMS Microbiology Ecology 86 : 215-230
DOMAIZON, I., SAVICHTCHEVA, O., DEBROAS, D., ARNAUD, F., VILLAR, C., PIGNOL, C., ALRIC, B., PERGA, M.E. 2013. DNA from lake sediments reveals the long–term dynamics and diversity of Synechococcus assemblages. Biogeosciences. 10 : 3817-3838 DOI :10.5194/bg-10-3817-2013
Frossard, V., Millet, L., Verneaux, V., Jenny, J.-P., Arnaud, F., Magny, M., Poulenard, J., Perga, M.E. Chironomid assemblage reconstructions at multiple depths describe the oxygen-driven changes in a deep French lake during the last 150 years. Journal of Paleolimnology 50:257-273
Hugoni, M., Etien, S., Bourges, A., Lepère, C., Domaizon, I., Mallet, C., Bronner, G., Debroas, D., Mary, I. 2013. Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems. Journal Research in Microbiology. DOI :10.1016/j.resmic.2013.01.004.
Hugoni, M., Taib, N., debroas, D., Domaizon, I., Jouan Dufournel, I., Bronner, D., Salter, I., Agogué, H., Mary, I., Galand, P.E. 2013. Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. PNAS. DOI : 10.1073/pnas.1216863110
Lepere, C., Domaizon, I., Taib, N., Mangot, J.F., Boucher, D., DEBROAS, D. 2013. Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems. FEMS Microbiology Ecology. DOI:10.1111/1574-6941.12100
Masclaux, H., Perga, M.E., Kagami, M., Desvilettes, C., Gilles Bourdier, G. and Bec, A. 2013. How pollen organic matter enters freshwater food webs. Limnology & Oceanography 58(4):1185-1195
PARVATHI, A., ZHONG, X., ANGRIA SRIRAM, P.R, JACQUET, S. 2013. Dynamics of auto- and heterotrophic picoplankton and associated viruses in Lake Geneva. Hydrology and Earth System Sciences Discussion. 10 : 8715-8746
Taib, N., Mangot, J.F, Domaizon, I., Bronner, G., Debroas, D. 2013. Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity. PLOsOne. 8(3) : e58950
Zemb, O., Manefield, M., Thomas, F., Jacquet, S. 2013. Phage adsorption to bacteria in the light of the electrostatics: A case study using E. coli, T2 and flow cytometry. Journal of Virological Methods 189 : 283-289
Zhong, X., Berdjeb, L., Jacquet, S. 2013. Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in two large and deep peri-alpine lakes. FEMS Microbiology Ecology 86 : 312-326
ZHONG, X., JACQUET, S. 2013. Prevalence of viral photosynthetic and capsid protein genes from cyanophages in two large and deep peri-alpine lakes. Applied and Environmental Microbiology 79:7169-7178
ZHONG, X., COLOMBET, J., PRADEEP, A.S., JACQUET, S. 2013. Variations in abundance, genome size, morphology, and functional role of the virioplankton of lakes Annecy and Bourget over a one-year study. Microbial Ecology DOI: 10.1007/s00248-013-0320-2
Zhong, X., F. Rimet and S. Jacquet. 2013. Seasonal variations in PCR-DGGE fingerprinted viruses infecting phytoplankton in large and deep peri-alpine lakes. Ecological Research DOI : 10.1007/s11284-013-1121-2
EQUIPE RITOXE
Bonnineau, C., Tlili, A., Faggiano, L., Montuelle, B., Guasch H., 2013. The use of antioxidant enzymes in freshwater biofilms: Temporal variability vs. toxicological responses. Aquatic Toxicology. 136-137 : 60-71
Bouchez, A., PASCAULT, N., CHARDON, C., Bouvy, M., Cecchi, P., LAMBS, L., HERTEMAN, M., FROMARD, F., GOT, P., Leboulanger, C. 2013. Mangrove microbial diversity and the impact of trophic contamination. Marine Pollution Bulletin 66 : 39-46
Chaabna, Z., Forey, F., Reyrolle, M., Jarraud, S., Atlan, D., Fontvieille, D., Gilbert, C. 2013. Molecular diversity and high virulence of Legionella pneumophila strains isolated from biofilms developed within a warm spring of a thermal spa. BMC Microbiol. 13, 17
El Kass, M., Ladj, R., MUGNIER, Y., Le Dantec, R., Hadji, R., Marty, J.C., Rouxel, DURAND, C., Fontvieille, D., Rogalska, E., Galez, C. 2013. Temperature-dependent adsorption of surfactant molecules and associated crystallization kinetics of noncentrosymmetric Fe(IO3)3 nanorods in microemulsions. Material Research Bulletin, 48 : 4431-4437
Foulquier, A., Volat, B., Neyra, M., Bornette, G., Montuelle, B. 2013. Long-term impact of hydrological regime on structure and function of microbial communities in riverine wetland sediments, FEMS-Microbiology Ecology, 85(2) : 211-26.
GILLET, C., LANG, C., DUBOIS, J.P. 2013. Fluctuations of perch populations in Lake Geneva from 1984 to 2011 estimated from the number and size of egg strands collected in two locations exposed to different fishing practices. Fisheries Management and Ecology. 20 : 484-493
KERMARREC, L., BOUCHEZ, A., RIMET, F., HUMBERT, J.F., 2013. First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kützing) Kützing Complex (Bacillariophyta). Protist. 164 : 686-705
KERMARREC, L., FRANC, A., RIMET, F., CHAUMEIL, P., HUMBERT, J.F., BOUCHEZ, A., 2013. Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. Molecular Ecology Ressources. 13: 607-619
LARRAS, F., LAMBERT, A.S., PESCE, S., RIMET, F., BOUCHEZ, A., MONTUELLE, B., 2013. The effect of temperature and a herbicide mixture on freshwater periphytic algae. Ecotoxicology and Environmental Safety. 98 : 162-170
LARRAS, F., MONTUELLE, B., BOUCHEZ, A. 2013. Assessment of toxicity thresholds in aquatic environments: does benthic growth of diatoms affect their exposure and sensitivity to herbicides? STOTEN. 463-464 : 469-477
MARCEL, R., BOUCHEZ, A., RIMET, F., 2013. Influence of herbicide contamination on diversity and ecological guilds of river diatoms. Cryptogamie Algologie. 34: 169-183
MARTIGNAC, F., BAGLINIERE, J.L., THIEULLE, L., OMBREDANE, D., GUILLARD, J., 2013. Influences of hydraulic modifications caused by a dam on Atlantic salmon (Salmo salar) upstream migration in the Couesnon River (Mont Saint-Michel Bay) using hydroacoustics. Estuar Coast Shelf. S 134 : 181-187
Mermillod-Blondin, F, Foulquier, A., Gilbert, F., Navel, S., Montuelle, B., Bellvert, F., Comte, G., Grossi, V., Lecuyer, C., Simon, L, 2013. Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex on biogeochemical processes occurring in river sediments. STOTEN. 450-451 : 230-241
RICHARD, A., O’ROURKE, J., CAUDRON, A., CATTANEO, F. 2013. Effects of passive integrated transponder tagging methods on survival, tag retention and growth of age-0 brown trout. Fisheries Research. 145 : 37-42
Samedy, V., Josse, E., Guillard, J., Pierre, M., Girardin, M, Boët, P., 2013. Comparisons of vertical hydroacoustic survey strategies for monitoring fish distributions in the Gironde estuary (France). Estuar Coast Shelf. S 134 : 174-180
Sanchez-Perez, JM, Montuelle, B., Mouchet, F., Gauthier, L., Julien, F., Sauvage, S., Teissier, S., Dedieu, K., Destrieux, D., Vervier, P., Gerino, M., 2013., Role of the hyporheic heterotrophic biofilm on transformation and toxicity of pesticides. International Journal of Limnology. 49,2 : 87-95
Viboud, S., Papaiconomou, N., Peyrard, C., Dubled, M., Mugnier, Y., Fontvieille, D. 2013. Toxicological consequences of extracting KNbO3 or BaTiO3 nanoparticles from water using ionic liquids. RSC Advances. 3:9223-9227
Yule, D., Evrard, L.M, Cachera, S., Colon, M., Guillard, J. 2013. Comparing Two Fish Sampling Standards Over Time: Largely Congruent Results But With Caveats. Freshwater Biology. 58: 2074-2088. DOI:10.1111/fwb.12192
EQUIPE BV
ETIENNE, D., RUFFALDI, P., DUPOUEY, E., RITZ, F., DAMBRINE, E. (2013) Searching for ancient forests: a 2000 year record of land use changes in the Lorraine plateau deduced from the pollen composition of closed depressions. The Holocene 23, 678-691
GIGUET-COVEX, C., POULENARD, J., CHALMIN, E., ARNAUD, F., RIVARD, C., JENNY, J.P., DORIOZ, J.M. 2013. XANES spectroscopy as a tool to trace phosphorus transformation during soil genesis and mountain ecosystem development from lake sediments. Geochimica et Cosmochimica Acta. 118 : 129-147. DOI : 10.1016/j.gca.2013.04.017
JENNY, JP., ARNAUD, F., DORIOZ, JM., GIGUET COVEX, C., FROSSARD, C. SABATIER, P., Millet, L., REYSS JL, TACHIKAWA, K., BARD, E., PIGNOL, C., PERGA, ME. (2013) A spatiotemporal investigation of varved sediments highlights the dynamics of hypolimnetic hypoxia in a large hard-water lake over the last 150 years. Limnology and Oceanography. 58(4), 1395-1408.
ROBIN, J., WEZEL, A., BORNETTE, G., ARTHAUD, F., ANGELIBERT, S., ROSSET, V., OERTLI, B. 2013, Biodiversity in eutrophicated shallow lakes: determination of tipping points and tools for monitoring. Hydrobiologia, 723(1): 63-75
PEZET, F., DORIOZ, JM., QUETIN, P., LAFFORGUES, M., TREVISAN, D. (2013). SWAT-mVSA: A procedure to predict diffuse P pollution for agricultural catchments with various water tables. J. hydrologic engineering, 10.1061/ (ASCE) HE.194-914
Van der Heijden, G., Midwood, A.J., Craig, C.A., Pollier, B., Dambrine, E., Legout, A., 2013 - Mg and Ca root uptake and vertical transfer in soils assessed by an in situ ecosystem scale multi-isotopic (26Mg & 44Ca) tracing experiment in a beech stand (Breuil-Chenue, France) Plant and Soil, 369, 33-45
Van der Heijden, G., LEGOUT, A., POLLIER, B., BRECHET, C., RANGER, J., DAMBRINE, E. (2013) Tracing and modeling preferential water flow through an acid forest soil – potential impact on nutrient leaching. Geoderma 195–196, 12–22
Van der Heijden, G., LEGOUT, A., POLLIER, B., ranger, J., MARESCHAL, L., TURPAULT, MP., DAMBRINE, e. (2013) Assessing Mg and Ca depletion from broadleaf forest soils and potential causes – A case study in the Morvan highlands. 293, 65–78
INTER-EQUIPE
Berthon, V., Marchetto, A., Rimet, F., Dormia, E., Jenny, J.P., Pignol, C., Perga, M.E. Trophic history of French sub-alpine lakes over the last ~150 years: phosphorus reconstruction and assessment of taphonomic biases. Journal of Limnology 72:417-429
Jenny, J.P., Arnaud, F., Dorioz, JM, Giguet-Covex, C., Frossard, V., Sabatier, P., Millet, L., Reyss, JL, Tachikawa, K. Bard, E., Pignol, C. Soufi, F., Romeyer, O. & Perga, M.E. A spatio-temporal sediment investigation highlights the dynamics of hypolimnetic hypoxia in a large hardwater lake over 150 years. Limnology & Oceanography. 58(4 ): 1395-1408
Perga, M.E, Domaizon, I., Guillard, J., Anneville, O. 2013. Cyanobacterial blooms: trophic dead-ends or unexpected dietary bonus. Oecologia. 172 : 551-562 DOI 10.1007/s00442-012-2519-1
Sotton, B., Guillard, J., Anneville, O., Givaudan, N., Domaizon, I. Trophic transfer of microcystins through the lake pelagic food web: evidence for the role of zooplankton as a vector in fish contamination. Science of the Total Environment.466-467 : 152-163
Articles dans des revues à comité de lecture non répertoriées dans la base ISI Web of Knowledge. (ACLN)
EQUIPE BIO-FEEL
Birck, C., Epaillard, I., Leccia, M.F., Crassous, C., Morand, A., Miaud, C. Bertrand, C., Cavalli, L., Jacquet, S., Moullec, P., Bonnet, R., Sagot, C., Franquet, E., Nellier, Y.M., Cottin, N., Pignol, C. Malet, E. Naffrechoux, E., Giguet-Covex, C., M.E. Perga, Jouffroy-Bapicot, I., DAMBRINE, E., Millet, L., Sabatier, P., Wilhelm, B., Perren, B., Arnaud, F. 2013. Sentinel lakes: a network for the study and management of mountain lakes in the French Alps and in Corsica. Journal on Protected Mountain Areas Research and Management 5 : 61-68
Garabetian, F., Lyautey, E., Bourasseau, L., Daffe, G., Girault, E., Jude-Lemeilleur, F., Leconte, M., Persilié, E., Raymond, N., Thévand, A., and Vitte, I. 2013. Identification des sources de contamination fécales en milieu côtier (IDFEC) : Validation d’une base de données de microbial source tracking pour le Bassin d’Arcachon. Techniques Sciences Méthodes 4:40-51
Jacquet, S., Chardon, C., Personnic, S., Domaizon, I. 2013. Are grazers and/or viruses structuring factors of the bacterial community in Lake Geneva? Advances in Microbiology. 3 : 233-248 DOI: 10.4236/aim.2013.33035
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